bioinformatics

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Brett Milash	RMACC	bioinformatics python
Carrie Brown	CAREERS, ACCESS CSSN	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Balamurugan Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules hpc-cluster-build hpc-operations more...
Larry Feinstein	Northeast	bioinformatics
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nick Dusek	Campus Champions	administering-hpc anaconda bash batch-jobs bioinformatics compiling containers data-transfer more...
Nect Admin	Great Plains, Northeast, RMACC	astrophysics bioinformatics cgroups data-lifecycle deep-learning file-transfer	science-gateway
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules ondemand more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Shane Sanders	Campus Champions	bioinformatics c c++ containers machine-learning programming python research-grants more...	archiving big-data data-analysis data-compliance data-lifecycle data-management data-reproducibility data-retention more...
Xiaoqin Huang	ACCESS CSSN	access-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
William Sanders	Campus Champions	bioinformatics c c++ containers machine-learning programming python research-grants more...	archiving big-data data-analysis data-compliance data-lifecycle data-management data-reproducibility data-retention more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...
Ying Zhang	CAREERS	bioinformatics	bioinformatics deep-learning
Yun Shen	CAREERS, Northeast, ACCESS CSSN	big-data bioinformatics data-analysis data-science genomics ondemand programming Programming more...

Users

Name	Roles	Skills	Interests
Nect Admin	cise	astrophysics bioinformatics cgroups data-lifecycle deep-learning file-transfer	science-gateway

Projects

Project Title	Project Institution Sort descending	Project Owner	Tags	Status
Mo: SEMO - Research Computing Program Development	Southeast Missouri State University	Kevin Brandt	administering-hpc, bioinformatics, cluster-management, cluster-support, genomics, hardware, professional-development, software-carpentry, workforce-development	In Progress

Blog Entries

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Affinity Groups

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Announcements

Title	Date
Ookami Webinar	02/14/24
2024 HuBMAP Underrepresented Student Internship Program	10/31/23
Open Call: Minisymposia for PASC24	10/05/23

Upcoming Events & Trainings

No events or trainings are currently scheduled.

Topics from Ask.CI

Resources

Title	Category	Tags	Skill Level
Optimizing Research Workflows - A Documentation of Snakemake	Docs	documentation, data-analysis, data-reproducibility, workflow, bioinformatics, data-science, python	Intermediate, Advanced
Samtools Documentation	Docs	documentation, data-analysis, bioinformatics, data-science, genomics	Beginner, Intermediate, Advanced
Bioinformatics Workflow Management with Nextflow	Docs	cloud-computing, parallelization, data-management, bioinformatics, training	Beginner, Intermediate

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Engagements

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People with Expertise

Rob Harbert

Stonehill College

Programs

Northeast

Roles

mentor

Expertise

anaconda

batch-jobs

big-data

biology

+9 more tags

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Roles

mentor, research computing facilitator, research software engineer, cssn

xqhuang at Rice

Expertise

adding-users

allocations-extension

+83 more tags

Yun Shen

Boston University

Programs

CAREERS, Northeast, ACCESS CSSN

Roles

mentor

Expertise

big-data

data-analysis

data-science

genomics

+6 more tags

People with Interest

Chris Hemme

University of Rhode Island

Programs

CAREERS

Roles

researcher/educator

Interests

anaconda

big-data

bioinformatics

biology

data-analysis

+3 more tags

Bill Ni

Rensselaer Polytechnic Institute

Programs

CAREERS

Roles

student-facilitator

portrait

Interests

ai

astrophysics

aws

bash

big-data

+17 more tags

Adedeji Adekunle

Rutgers University, Camden

Programs

CAREERS

Roles

student-facilitator

Interests

archiving

azure

big-data

bioinformatics

biology

+46 more tags