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molecular-dynamics

Mentors and Regional Facilitators
Name Region Skills Interests
Aya Nawano CAREERS, ACCESS CSSN
Bala Desinghu ACCESS CSSN, Campus Champions, CAREERS, Northeast
Deborah Penchoff Campus Champions
Jacob Pessin Northeast
Juan Vanegas Northeast
Jason Key Campus Champions
Od Odbadrakh ACCESS CSSN
Lisa Perez SWEETER, ACCESS CSSN
Nannan Shan CCMNet, ACCESS CSSN
Paul Rulis Campus Champions
Russell Hofmann ACCESS CSSN, CCMNet
Xiaoqin Huang ACCESS CSSN
Swabir Silayi ACCESS CSSN, CCMNet, Campus Champions
Sebastian Sensale Campus Champions
Thomas Cheatham Campus Champions, RMACC
Projects
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Announcements

Title Date
Ookami Webinar 02/14/24
Request for Proposals for Anton 2 05/09/23

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Engagements

Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
  • Summary and objectives of the proposed experiments: 
  1. An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
  2. Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
  3. Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
  4. Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress

People with Expertise

Nannan Shan

Purdue University

Programs

CCMNet, ACCESS CSSN

Roles

mentor, researcher/educator, research computing facilitator, research software engineer, cssn, Affinity Group Leader, Consultant, CCMNet

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Expertise

Lenore Martin

University of Rhoide Island

Programs

CAREERS

Roles

researcher/educator

Lenore in office

Expertise

Alexandra Lamtyugina

University of Chicago

Programs

ACCESS CSSN

Roles

student-facilitator

Photo of Alexandra Lamtyugina

Expertise

People with Interest

Emanuela Riglioni

Programs

ACCESS CSSN

Roles

student-facilitator

Portrait E.Riglioni

Interests

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Alison McClellan

Programs

ACCESS CSSN

Roles

student-facilitator

woman facing camera on a sunny day with bay in background

Interests

Russell Hofmann

Internet2

Programs

ACCESS CSSN, CCMNet

Roles

mentor, cssn, CCMNet

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Interests