genomics

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Carrie Brown	CAREERS, ACCESS CSSN	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules ondemand more...
Russell Hofmann	ACCESS CSSN	computational-chemistry data-analysis data-science dft gaussian genomics gromacs kubernetes more...	administering-hpc cluster-support computational-chemistry data-analysis data-science gaussian genomics gromacs more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Xiaoqin Huang	ACCESS CSSN	access-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...
Yun Shen	CAREERS, Northeast, ACCESS CSSN	big-data bioinformatics data-analysis data-science genomics ondemand programming Programming more...

Users

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Projects

Project Title	Project Institution	Project Owner	Tags	Status
Mo: SEMO - Research Computing Program Development	Southeast Missouri State University	Kevin Brandt	administering-hpc, bioinformatics, cluster-management, cluster-support, genomics, hardware, professional-development, software-carpentry, workforce-development	In Progress

Blog Entries

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Affinity Groups

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Announcements

Title	Date
Ookami Webinar	02/14/24

Upcoming Events & Trainings

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Topics from Ask.CI

Resources

Title	Category	Tags	Skill Level
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)	Learning	ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science-gateway, c++, jupyterhub, python	Beginner, Intermediate, Advanced
Biopython Tutorial	Learning	bioinformatics, genomics, python	Beginner, Intermediate, Advanced
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced

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Engagements

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People with Expertise

Emma Strand

University of Rhode Island

Programs

CAREERS

Roles

student-facilitator

Expertise

anaconda

archiving

bash

big-data

+18 more tags

Ifeoma Ugwuanyi

Rutgers University-Newark

Programs

CAREERS

Roles

student-facilitator

Expertise

biology

data-analysis

genomics

python

+2 more tags

Alison McClellan

Programs

ACCESS CSSN

Roles

student-facilitator

woman facing camera on a sunny day with bay in background

Expertise

biology

computational-chemistry

genomics

project-management

python

+3 more tags

People with Interest

Stanley Nwoji

Harrisburg University of Science and Technology

Programs

CAREERS

Roles

researcher/educator

Stanley Nwoji, Ph.D.

Interests

big-data

community-outreach

conda

data-analysis

deep-learning

+20 more tags

Lenore Martin

University of Rhoide Island

Programs

CAREERS

Roles

researcher/educator

Lenore in office

Interests

administering-hpc

ai

amber

anaconda

bioinformatics

+53 more tags

Timothy Meeker

Programs

ACCESS CSSN

Roles

cssn

Interests

ai

aws

bash

big-data

bioinformatics

+28 more tags