software-carpentry

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Devin Bayly	ACCESS CSSN, Campus Champions, CCMNet	ACCESS-account adding-users affinity-group allocations-extension allocations-proposal batch-jobs community-outreach computer-graphics more...	ACCESS ACCESS-credits affinity-group allocations-extension computer-graphics computer-vision containers cuda more...
Carrie Brown	CAREERS, ACCESS CSSN, CCMNet	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Bala Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
diana Trotman	CAREERS	benchmarking biology cloud-open-source cloudlab community-outreach computational-chemistry cybersecurity data-analysis more...	benchmarking bioinformatics biology cleanup cloud-commercial computational-chemistry containers cybersecurity more...
Douglas Jennewein	At-Large, Campus Champions	management project-management software-carpentry
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Evan Linde	Campus Champions	bash scripting software-carpentry sql	ceph cui cybersecurity key-management kubernetes openstack s3
Eric Vlach	Campus Champions	aws data-management data-security research-facilitation software-carpentry unix-environment	ACCESS administering-hpc containers cybersecurity git machine-learning parallelization python
Fernando Garzon	ACCESS CSSN	abstract ai aws bash batch-jobs big-data citation containers more...	ai aws azure bash batch-jobs big-data c c++ more...
Yu-Chieh Chi	Campus Champions	anaconda bash batch-jobs c c++ computational-chemistry containers cuda more...
Jeff Dusenberry	Campus Champions, Northeast	batch-jobs debugging fortran gpu mpi oceanography scripting sge more...
Juan Jose Garc…	ACCESS CSSN, Campus Champions	bash c++ git github r software-carpentry tmux version-control	ACCESS-website cuda generative-ai nlp
Juanjo Garcia Mesa	Campus Champions, CCMNet	ACCESS-allocations bash batch-jobs bioinformatics c++ git jetstream job-array more...	generative-ai job-accounting LLM mpi NAIRR-pilot natural-language-processing openmpi programming-best-practices more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jeffrey Weekley	Campus Champions	administering-hpc archiving biology community-outreach condo containers cybersecurity data-compliance more...
Jason Yalim	Campus Champions	administering-hpc bash benchmarking c c++ cpu-bound data-analysis data-management more...
Kimberly Thomas		community-outreach research-facilitation software-carpentry training	ACCESS-account ACCESS-credits adding-users administering-hpc allocation-management allocation-time allocation-users allocation-value more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Justin Oelgoetz	Campus Champions, CCMNet	abstract affiliations astrophysics bash benchmarking c c++ citation more...	administering-hpc ai amber astrophysics benchmarking c c++ charmm more...
Paul Rulis	Campus Champions	abstract affiliations ai bash batch-jobs c c++ checkpoint more...	abstract affiliations ai amber atlas bash batch-jobs benchmarking more...
Rebecca Belshe	Campus Champions, CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website affiliations affinity-group more...	astrophysics biology data-science genomics materials-science oceanography psychology
Mike Renfro	Campus Champions, CCMNet	administering-hpc anaconda bash conda environment-modules fortran git github more...
Amy Roberts	Campus Champions	acls bash containers dependencies docker git github open-storage-network more...
Ron Rahaman	Campus Champions	anaconda bash batch-jobs benchmarking c c++ cluster-support compiling more...	containers cpu-architecture dependencies documentation gpu hpc-arch-and-perf programming-best-practices software-carpentry more...
Shane Sanders	Campus Champions	bioinformatics c c++ containers machine-learning programming python research-grants more...	archiving big-data data-analysis data-compliance data-lifecycle data-management data-reproducibility data-retention more...
Swabir Silayi	ACCESS CSSN, CCMNet, Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management
William Sanders	Campus Champions	bioinformatics c c++ containers machine-learning programming python research-grants more...	archiving big-data data-analysis data-compliance data-lifecycle data-management data-reproducibility data-retention more...
Timothy Middelkoop	ACCESS CSSN, Campus Champions, CCMNet, Great Plains	abstract ACCESS-allocations administering-hpc affinity-group ansible api aws azure more...	abstract ACCESS ACCESS-allocations ACCESS-credits administering-hpc ansible anvil api more...

Users

Name	Roles	Skills	Interests
Douglas Jennewein	rcf	management project-management software-carpentry
Timothy Middelkoop	mentor regional facilitator researcher/educator rcf	abstract ACCESS-allocations administering-hpc affinity-group ansible api aws azure more...	abstract ACCESS ACCESS-allocations ACCESS-credits administering-hpc ansible anvil api more...

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Mo: SEMO - Research Computing Program Development	Southeast Missouri State University	Kevin Brandt	administering-hpc, bioinformatics, cluster-management, cluster-support, genomics, hardware, professional-development, software-carpentry, workforce-development	In Progress
OK: SWOSU - Enhancing Course Curriculum using HPC	Southwest Oklahoma State University	Kevin Brandt	cloud-open-source, cluster-management, cluster-support, hpc-operations, jupyterhub, kubernetes, open-ondemand, osg, performance-tuning, professional-development, r, rstudio-server, schedulers, scheduling, software-carpentry, workforce-development	In Progress

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Knowledge Base Resources

Title	Category	Tags	Skill Level
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced
HPC Carpentry	Website	software-carpentry, training	Beginner, Intermediate, Advanced
R for Research Scientists	Learning	software-carpentry, workforce-development, r	Beginner, Intermediate